Publications


1: Pickard D, Toribio AL, Petty NK, van Tonder A, Yu L, Goulding D, Barrell B,

Rance R, Harris D, Wetter M, Wain J, Choudhary J, Thomson N, Dougan G. A

conserved acetyl esterase domain targets diverse bacteriophages to the Vi

capsular receptor of Salmonella enterica serovar Typhi. J Bacteriol. 2010

Nov;192(21):5746-54. doi: 10.1128/JB.00659-10. Epub 2010 Sep 3. PubMed PMID:

20817773; PubMed Central PMCID: PMC2953684.


2: Hughes DJ, Kipar A, Milligan SG, Cunningham C, Sanders M, Quail MA, Rajandream

MA, Efstathiou S, Bowden RJ, Chastel C, Bennett M, Sample JT, Barrell B, Davison 

AJ, Stewart JP. Characterization of a novel wood mouse virus related to murid

herpesvirus 4. J Gen Virol. 2010 Apr;91(Pt 4):867-79. doi:

10.1099/vir.0.017327-0. Epub 2009 Nov 25. PubMed PMID: 19940063; PubMed Central

PMCID: PMC2888160.


3: Otto TD, Wilinski D, Assefa S, Keane TM, Sarry LR, Böhme U, Lemieux J, Barrell

B, Pain A, Berriman M, Newbold C, Llinás M. New insights into the blood-stage

transcriptome of Plasmodium falciparum using RNA-Seq. Mol Microbiol. 2010

Apr;76(1):12-24. doi: 10.1111/j.1365-2958.2009.07026.x. Epub 2010 Feb 4. PubMed

PMID: 20141604; PubMed Central PMCID: PMC2859250.


4: Jackson AP, Gamble JA, Yeomans T, Moran GP, Saunders D, Harris D, Aslett M,

Barrell JF, Butler G, Citiulo F, Coleman DC, de Groot PW, Goodwin TJ, Quail MA,

McQuillan J, Munro CA, Pain A, Poulter RT, Rajandream MA, Renauld H, Spiering MJ,

Tivey A, Gow NA, Barrell B, Sullivan DJ, Berriman M. Comparative genomics of the 

fungal pathogens Candida dubliniensis and Candida albicans. Genome Res. 2009

Dec;19(12):2231-44. doi: 10.1101/gr.097501.109. Epub 2009 Sep 10. PubMed PMID:

19745113; PubMed Central PMCID: PMC2792176.


5: Berriman M, Haas BJ, LoVerde PT, Wilson RA, Dillon GP, Cerqueira GC, Mashiyama

ST, Al-Lazikani B, Andrade LF, Ashton PD, Aslett MA, Bartholomeu DC, Blandin G,

Caffrey CR, Coghlan A, Coulson R, Day TA, Delcher A, DeMarco R, Djikeng A, Eyre

T, Gamble JA, Ghedin E, Gu Y, Hertz-Fowler C, Hirai H, Hirai Y, Houston R, Ivens 

A, Johnston DA, Lacerda D, Macedo CD, McVeigh P, Ning Z, Oliveira G, Overington

JP, Parkhill J, Pertea M, Pierce RJ, Protasio AV, Quail MA, Rajandream MA, Rogers

J, Sajid M, Salzberg SL, Stanke M, Tivey AR, White O, Williams DL, Wortman J, Wu 

W, Zamanian M, Zerlotini A, Fraser-Liggett CM, Barrell BG, El-Sayed NM. The

genome of the blood fluke Schistosoma mansoni. Nature. 2009 Jul

16;460(7253):352-8. doi: 10.1038/nature08160. PubMed PMID: 19606141; PubMed

Central PMCID: PMC2756445.


6: Holden MT, Hauser H, Sanders M, Ngo TH, Cherevach I, Cronin A, Goodhead I,

Mungall K, Quail MA, Price C, Rabbinowitsch E, Sharp S, Croucher NJ, Chieu TB,

Mai NT, Diep TS, Chinh NT, Kehoe M, Leigh JA, Ward PN, Dowson CG, Whatmore AM,

Chanter N, Iversen P, Gottschalk M, Slater JD, Smith HE, Spratt BG, Xu J, Ye C,

Bentley S, Barrell BG, Schultsz C, Maskell DJ, Parkhill J. Rapid evolution of

virulence and drug resistance in the emerging zoonotic pathogen Streptococcus

suis. PLoS One. 2009 Jul 15;4(7):e6072. doi: 10.1371/journal.pone.0006072. PubMed

PMID: 19603075; PubMed Central PMCID: PMC2705793.


7: Ward PN, Holden MT, Leigh JA, Lennard N, Bignell A, Barron A, Clark L, Quail

MA, Woodward J, Barrell BG, Egan SA, Field TR, Maskell D, Kehoe M, Dowson CG,

Chanter N, Whatmore AM, Bentley SD, Parkhill J. Evidence for niche adaptation in 

the genome of the bovine pathogen Streptococcus uberis. BMC Genomics. 2009 Jan

28;10:54. doi: 10.1186/1471-2164-10-54. PubMed PMID: 19175920; PubMed Central

PMCID: PMC2657157.


8: Holden MT, Seth-Smith HM, Crossman LC, Sebaihia M, Bentley SD, Cerdeño-Tárraga

AM, Thomson NR, Bason N, Quail MA, Sharp S, Cherevach I, Churcher C, Goodhead I, 

Hauser H, Holroyd N, Mungall K, Scott P, Walker D, White B, Rose H, Iversen P,

Mil-Homens D, Rocha EP, Fialho AM, Baldwin A, Dowson C, Barrell BG, Govan JR,

Vandamme P, Hart CA, Mahenthiralingam E, Parkhill J. The genome of Burkholderia

cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients. J Bacteriol.

2009 Jan;191(1):261-77. doi: 10.1128/JB.01230-08. Epub 2008 Oct 17. Erratum in: J

Bacteriol. 2009 Apr;191(8):2907. PubMed PMID: 18931103; PubMed Central PMCID:

PMC2612433.


9: Carver T, Berriman M, Tivey A, Patel C, Böhme U, Barrell BG, Parkhill J,

Rajandream MA. Artemis and ACT: viewing, annotating and comparing sequences

stored in a relational database. Bioinformatics. 2008 Dec 1;24(23):2672-6. doi:

10.1093/bioinformatics/btn529. Epub 2008 Oct 9. PubMed PMID: 18845581; PubMed

Central PMCID: PMC2606163.


10: Pain A, Böhme U, Berry AE, Mungall K, Finn RD, Jackson AP, Mourier T, Mistry 

J, Pasini EM, Aslett MA, Balasubrammaniam S, Borgwardt K, Brooks K, Carret C,

Carver TJ, Cherevach I, Chillingworth T, Clark TG, Galinski MR, Hall N, Harper D,

Harris D, Hauser H, Ivens A, Janssen CS, Keane T, Larke N, Lapp S, Marti M, Moule

S, Meyer IM, Ormond D, Peters N, Sanders M, Sanders S, Sargeant TJ, Simmonds M,

Smith F, Squares R, Thurston S, Tivey AR, Walker D, White B, Zuiderwijk E,

Churcher C, Quail MA, Cowman AF, Turner CM, Rajandream MA, Kocken CH, Thomas AW, 

Newbold CI, Barrell BG, Berriman M. The genome of the simian and human malaria

parasite Plasmodium knowlesi. Nature. 2008 Oct 9;455(7214):799-803. doi:

10.1038/nature07306. PubMed PMID: 18843368; PubMed Central PMCID: PMC2656934.


11: Mourier T, Carret C, Kyes S, Christodoulou Z, Gardner PP, Jeffares DC,

Pinches R, Barrell B, Berriman M, Griffiths-Jones S, Ivens A, Newbold C, Pain A. 

Genome-wide discovery and verification of novel structured RNAs in Plasmodium

falciparum. Genome Res. 2008 Feb;18(2):281-92. Epub 2007 Dec 20. PubMed PMID:

18096748; PubMed Central PMCID: PMC2203626.


12: Peacock CS, Seeger K, Harris D, Murphy L, Ruiz JC, Quail MA, Peters N, Adlem 

E, Tivey A, Aslett M, Kerhornou A, Ivens A, Fraser A, Rajandream MA, Carver T,

Norbertczak H, Chillingworth T, Hance Z, Jagels K, Moule S, Ormond D, Rutter S,

Squares R, Whitehead S, Rabbinowitsch E, Arrowsmith C, White B, Thurston S,

Bringaud F, Baldauf SL, Faulconbridge A, Jeffares D, Depledge DP, Oyola SO,

Hilley JD, Brito LO, Tosi LR, Barrell B, Cruz AK, Mottram JC, Smith DF, Berriman 

M. Comparative genomic analysis of three Leishmania species that cause diverse

human disease. Nat Genet. 2007 Jul;39(7):839-47. Epub 2007 Jun 17. PubMed PMID:

17572675; PubMed Central PMCID: PMC2592530.


13: Brosch R, Gordon SV, Garnier T, Eiglmeier K, Frigui W, Valenti P, Dos Santos 

S, Duthoy S, Lacroix C, Garcia-Pelayo C, Inwald JK, Golby P, Garcia JN, Hewinson 

RG, Behr MA, Quail MA, Churcher C, Barrell BG, Parkhill J, Cole ST. Genome

plasticity of BCG and impact on vaccine efficacy. Proc Natl Acad Sci U S A. 2007 

Mar 27;104(13):5596-601. Epub 2007 Mar 19. PubMed PMID: 17372194; PubMed Central 

PMCID: PMC1838518.


14: Bentley SD, Vernikos GS, Snyder LA, Churcher C, Arrowsmith C, Chillingworth

T, Cronin A, Davis PH, Holroyd NE, Jagels K, Maddison M, Moule S, Rabbinowitsch

E, Sharp S, Unwin L, Whitehead S, Quail MA, Achtman M, Barrell B, Saunders NJ,

Parkhill J. Meningococcal genetic variation mechanisms viewed through comparative

analysis of serogroup C strain FAM18. PLoS Genet. 2007 Feb 16;3(2):e23. Epub 2006

Dec 21. PubMed PMID: 17305430; PubMed Central PMCID: PMC1797815.


15: Holden MT, Scott A, Cherevach I, Chillingworth T, Churcher C, Cronin A, Dowd 

L, Feltwell T, Hamlin N, Holroyd S, Jagels K, Moule S, Mungall K, Quail MA, Price

C, Rabbinowitsch E, Sharp S, Skelton J, Whitehead S, Barrell BG, Kehoe M,

Parkhill J. Complete genome of acute rheumatic fever-associated serotype M5

Streptococcus pyogenes strain manfredo. J Bacteriol. 2007 Feb;189(4):1473-7. Epub

2006 Sep 29. PubMed PMID: 17012393; PubMed Central PMCID: PMC1797351.


16: Khan A, Böhme U, Kelly KA, Adlem E, Brooks K, Simmonds M, Mungall K, Quail

MA, Arrowsmith C, Chillingworth T, Churcher C, Harris D, Collins M, Fosker N,

Fraser A, Hance Z, Jagels K, Moule S, Murphy L, O'Neil S, Rajandream MA, Saunders

D, Seeger K, Whitehead S, Mayr T, Xuan X, Watanabe J, Suzuki Y, Wakaguri H,

Sugano S, Sugimoto C, Paulsen I, Mackey AJ, Roos DS, Hall N, Berriman M, Barrell 

B, Sibley LD, Ajioka JW. Common inheritance of chromosome Ia associated with

clonal expansion of Toxoplasma gondii. Genome Res. 2006 Sep;16(9):1119-25. Epub

2006 Aug 10. PubMed PMID: 16902086; PubMed Central PMCID: PMC1557770.


17: Sebaihia M, Wren BW, Mullany P, Fairweather NF, Minton N, Stabler R, Thomson 

NR, Roberts AP, Cerdeño-Tárraga AM, Wang H, Holden MT, Wright A, Churcher C,

Quail MA, Baker S, Bason N, Brooks K, Chillingworth T, Cronin A, Davis P, Dowd L,

Fraser A, Feltwell T, Hance Z, Holroyd S, Jagels K, Moule S, Mungall K, Price C, 

Rabbinowitsch E, Sharp S, Simmonds M, Stevens K, Unwin L, Whithead S, Dupuy B,

Dougan G, Barrell B, Parkhill J. The multidrug-resistant human pathogen

Clostridium difficile has a highly mobile, mosaic genome. Nat Genet. 2006

Jul;38(7):779-86. Epub 2006 Jun 25. PubMed PMID: 16804543.


18: Bentley SD, Aanensen DM, Mavroidi A, Saunders D, Rabbinowitsch E, Collins M, 

Donohoe K, Harris D, Murphy L, Quail MA, Samuel G, Skovsted IC, Kaltoft MS,

Barrell B, Reeves PR, Parkhill J, Spratt BG. Genetic analysis of the capsular

biosynthetic locus from all 90 pneumococcal serotypes. PLoS Genet. 2006

Mar;2(3):e31. Epub 2006 Mar 10. PubMed PMID: 16532061; PubMed Central PMCID:

PMC1391919.


19: Nierman WC, Pain A, Anderson MJ, Wortman JR, Kim HS, Arroyo J, Berriman M,

Abe K, Archer DB, Bermejo C, Bennett J, Bowyer P, Chen D, Collins M, Coulsen R,

Davies R, Dyer PS, Farman M, Fedorova N, Fedorova N, Feldblyum TV, Fischer R,

Fosker N, Fraser A, García JL, García MJ, Goble A, Goldman GH, Gomi K,

Griffith-Jones S, Gwilliam R, Haas B, Haas H, Harris D, Horiuchi H, Huang J,

Humphray S, Jiménez J, Keller N, Khouri H, Kitamoto K, Kobayashi T, Konzack S,

Kulkarni R, Kumagai T, Lafon A, Latgé JP, Li W, Lord A, Lu C, Majoros WH, May GS,

Miller BL, Mohamoud Y, Molina M, Monod M, Mouyna I, Mulligan S, Murphy L, O'Neil 

S, Paulsen I, Peñalva MA, Pertea M, Price C, Pritchard BL, Quail MA,

Rabbinowitsch E, Rawlins N, Rajandream MA, Reichard U, Renauld H, Robson GD,

Rodriguez de Córdoba S, Rodríguez-Peña JM, Ronning CM, Rutter S, Salzberg SL,

Sanchez M, Sánchez-Ferrero JC, Saunders D, Seeger K, Squares R, Squares S,

Takeuchi M, Tekaia F, Turner G, Vazquez de Aldana CR, Weidman J, White O,

Woodward J, Yu JH, Fraser C, Galagan JE, Asai K, Machida M, Hall N, Barrell B,

Denning DW. Genomic sequence of the pathogenic and allergenic filamentous fungus 

Aspergillus fumigatus. Nature. 2005 Dec 22;438(7071):1151-6. Erratum in: Nature. 

2006 Jan 26;439(7075):502. Lafton, Anne [corrected to Lafon, Anne]. PubMed PMID: 

16372009.


20: Carver TJ, Rutherford KM, Berriman M, Rajandream MA, Barrell BG, Parkhill J. 

ACT: the Artemis Comparison Tool. Bioinformatics. 2005 Aug 15;21(16):3422-3. Epub

2005 Jun 23. PubMed PMID: 15976072.


21: Wilson WH, Schroeder DC, Allen MJ, Holden MT, Parkhill J, Barrell BG,

Churcher C, Hamlin N, Mungall K, Norbertczak H, Quail MA, Price C, Rabbinowitsch 

E, Walker D, Craigon M, Roy D, Ghazal P. Complete genome sequence and lytic phase

transcription profile of a Coccolithovirus. Science. 2005 Aug

12;309(5737):1090-2. PubMed PMID: 16099989.


22: Keely SP, Renauld H, Wakefield AE, Cushion MT, Smulian AG, Fosker N, Fraser

A, Harris D, Murphy L, Price C, Quail MA, Seeger K, Sharp S, Tindal CJ, Warren T,

Zuiderwijk E, Barrell BG, Stringer JR, Hall N. Gene arrays at Pneumocystis

carinii telomeres. Genetics. 2005 Aug;170(4):1589-600. Epub 2005 Jun 18. PubMed

PMID: 15965256; PubMed Central PMCID: PMC1449779.


23: Ivens AC, Peacock CS, Worthey EA, Murphy L, Aggarwal G, Berriman M, Sisk E,

Rajandream MA, Adlem E, Aert R, Anupama A, Apostolou Z, Attipoe P, Bason N,

Bauser C, Beck A, Beverley SM, Bianchettin G, Borzym K, Bothe G, Bruschi CV,

Collins M, Cadag E, Ciarloni L, Clayton C, Coulson RM, Cronin A, Cruz AK, Davies 

RM, De Gaudenzi J, Dobson DE, Duesterhoeft A, Fazelina G, Fosker N, Frasch AC,

Fraser A, Fuchs M, Gabel C, Goble A, Goffeau A, Harris D, Hertz-Fowler C, Hilbert

H, Horn D, Huang Y, Klages S, Knights A, Kube M, Larke N, Litvin L, Lord A, Louie

T, Marra M, Masuy D, Matthews K, Michaeli S, Mottram JC, Müller-Auer S, Munden H,

Nelson S, Norbertczak H, Oliver K, O'neil S, Pentony M, Pohl TM, Price C,

Purnelle B, Quail MA, Rabbinowitsch E, Reinhardt R, Rieger M, Rinta J, Robben J, 

Robertson L, Ruiz JC, Rutter S, Saunders D, Schäfer M, Schein J, Schwartz DC,

Seeger K, Seyler A, Sharp S, Shin H, Sivam D, Squares R, Squares S, Tosato V,

Vogt C, Volckaert G, Wambutt R, Warren T, Wedler H, Woodward J, Zhou S,

Zimmermann W, Smith DF, Blackwell JM, Stuart KD, Barrell B, Myler PJ. The genome 

of the kinetoplastid parasite, Leishmania major. Science. 2005 Jul

15;309(5733):436-42. PubMed PMID: 16020728; PubMed Central PMCID: PMC1470643.


24: Berriman M, Ghedin E, Hertz-Fowler C, Blandin G, Renauld H, Bartholomeu DC,

Lennard NJ, Caler E, Hamlin NE, Haas B, Böhme U, Hannick L, Aslett MA, Shallom J,

Marcello L, Hou L, Wickstead B, Alsmark UC, Arrowsmith C, Atkin RJ, Barron AJ,

Bringaud F, Brooks K, Carrington M, Cherevach I, Chillingworth TJ, Churcher C,

Clark LN, Corton CH, Cronin A, Davies RM, Doggett J, Djikeng A, Feldblyum T,

Field MC, Fraser A, Goodhead I, Hance Z, Harper D, Harris BR, Hauser H, Hostetler

J, Ivens A, Jagels K, Johnson D, Johnson J, Jones K, Kerhornou AX, Koo H, Larke

N, Landfear S, Larkin C, Leech V, Line A, Lord A, Macleod A, Mooney PJ, Moule S, 

Martin DM, Morgan GW, Mungall K, Norbertczak H, Ormond D, Pai G, Peacock CS,

Peterson J, Quail MA, Rabbinowitsch E, Rajandream MA, Reitter C, Salzberg SL,

Sanders M, Schobel S, Sharp S, Simmonds M, Simpson AJ, Tallon L, Turner CM, Tait 

A, Tivey AR, Van Aken S, Walker D, Wanless D, Wang S, White B, White O, Whitehead

S, Woodward J, Wortman J, Adams MD, Embley TM, Gull K, Ullu E, Barry JD, Fairlamb

AH, Opperdoes F, Barrell BG, Donelson JE, Hall N, Fraser CM, Melville SE,

El-Sayed NM. The genome of the African trypanosome Trypanosoma brucei. Science.

2005 Jul 15;309(5733):416-22. PubMed PMID: 16020726.


25: Pain A, Renauld H, Berriman M, Murphy L, Yeats CA, Weir W, Kerhornou A,

Aslett M, Bishop R, Bouchier C, Cochet M, Coulson RM, Cronin A, de Villiers EP,

Fraser A, Fosker N, Gardner M, Goble A, Griffiths-Jones S, Harris DE, Katzer F,

Larke N, Lord A, Maser P, McKellar S, Mooney P, Morton F, Nene V, O'Neil S, Price

C, Quail MA, Rabbinowitsch E, Rawlings ND, Rutter S, Saunders D, Seeger K, Shah

T, Squares R, Squares S, Tivey A, Walker AR, Woodward J, Dobbelaere DA, Langsley 

G, Rajandream MA, McKeever D, Shiels B, Tait A, Barrell B, Hall N. Genome of the 

host-cell transforming parasite Theileria annulata compared with T. parva.

Science. 2005 Jul 1;309(5731):131-3. PubMed PMID: 15994557.


26: Eichinger L, Pachebat JA, Glöckner G, Rajandream MA, Sucgang R, Berriman M,

Song J, Olsen R, Szafranski K, Xu Q, Tunggal B, Kummerfeld S, Madera M, Konfortov

BA, Rivero F, Bankier AT, Lehmann R, Hamlin N, Davies R, Gaudet P, Fey P, Pilcher

K, Chen G, Saunders D, Sodergren E, Davis P, Kerhornou A, Nie X, Hall N, Anjard

C, Hemphill L, Bason N, Farbrother P, Desany B, Just E, Morio T, Rost R, Churcher

C, Cooper J, Haydock S, van Driessche N, Cronin A, Goodhead I, Muzny D, Mourier

T, Pain A, Lu M, Harper D, Lindsay R, Hauser H, James K, Quiles M, Madan Babu M, 

Saito T, Buchrieser C, Wardroper A, Felder M, Thangavelu M, Johnson D, Knights A,

Loulseged H, Mungall K, Oliver K, Price C, Quail MA, Urushihara H, Hernandez J,

Rabbinowitsch E, Steffen D, Sanders M, Ma J, Kohara Y, Sharp S, Simmonds M,

Spiegler S, Tivey A, Sugano S, White B, Walker D, Woodward J, Winckler T, Tanaka 

Y, Shaulsky G, Schleicher M, Weinstock G, Rosenthal A, Cox EC, Chisholm RL, Gibbs

R, Loomis WF, Platzer M, Kay RR, Williams J, Dear PH, Noegel AA, Barrell B, Kuspa

A. The genome of the social amoeba Dictyostelium discoideum. Nature. 2005 May

5;435(7038):43-57. PubMed PMID: 15875012; PubMed Central PMCID: PMC1352341.


27: Thomson NR, Yeats C, Bell K, Holden MT, Bentley SD, Livingstone M,

Cerdeño-Tárraga AM, Harris B, Doggett J, Ormond D, Mungall K, Clarke K, Feltwell 

T, Hance Z, Sanders M, Quail MA, Price C, Barrell BG, Parkhill J, Longbottom D.

The Chlamydophila abortus genome sequence reveals an array of variable proteins

that contribute to interspecies variation. Genome Res. 2005 May;15(5):629-40.

Epub 2005 Apr 18. PubMed PMID: 15837807; PubMed Central PMCID: PMC1088291.


28: Aslett M, Mooney P, Adlem E, Berriman M, Berry A, Hertz-Fowler C, Ivens AC,

Kerhornou A, Parkhill J, Peacock CS, Wood V, Rajandream MA, Barrell B, Tivey A.

Integration of tools and resources for display and analysis of genomic data for

protozoan parasites. Int J Parasitol. 2005 Apr 30;35(5):481-93. Review. PubMed

PMID: 15826641.


29: Cerdeño-Tárraga AM, Patrick S, Crossman LC, Blakely G, Abratt V, Lennard N,

Poxton I, Duerden B, Harris B, Quail MA, Barron A, Clark L, Corton C, Doggett J, 

Holden MT, Larke N, Line A, Lord A, Norbertczak H, Ormond D, Price C,

Rabbinowitsch E, Woodward J, Barrell B, Parkhill J. Extensive DNA inversions in

the B. fragilis genome control variable gene expression. Science. 2005 Mar

4;307(5714):1463-5. PubMed PMID: 15746427.


30: Loftus B, Anderson I, Davies R, Alsmark UC, Samuelson J, Amedeo P, Roncaglia 

P, Berriman M, Hirt RP, Mann BJ, Nozaki T, Suh B, Pop M, Duchene M, Ackers J,

Tannich E, Leippe M, Hofer M, Bruchhaus I, Willhoeft U, Bhattacharya A,

Chillingworth T, Churcher C, Hance Z, Harris B, Harris D, Jagels K, Moule S,

Mungall K, Ormond D, Squares R, Whitehead S, Quail MA, Rabbinowitsch E,

Norbertczak H, Price C, Wang Z, Guillén N, Gilchrist C, Stroup SE, Bhattacharya

S, Lohia A, Foster PG, Sicheritz-Ponten T, Weber C, Singh U, Mukherjee C,

El-Sayed NM, Petri WA Jr, Clark CG, Embley TM, Barrell B, Fraser CM, Hall N. The 

genome of the protist parasite Entamoeba histolytica. Nature. 2005 Feb

24;433(7028):865-8. PubMed PMID: 15729342.


31: Mourier T, Pain A, Barrell B, Griffiths-Jones S. A selenocysteine tRNA and

SECIS element in Plasmodium falciparum. RNA. 2005 Feb;11(2):119-22. PubMed PMID: 

15659354; PubMed Central PMCID: PMC1370700.


32: Hall N, Karras M, Raine JD, Carlton JM, Kooij TW, Berriman M, Florens L,

Janssen CS, Pain A, Christophides GK, James K, Rutherford K, Harris B, Harris D, 

Churcher C, Quail MA, Ormond D, Doggett J, Trueman HE, Mendoza J, Bidwell SL,

Rajandream MA, Carucci DJ, Yates JR 3rd, Kafatos FC, Janse CJ, Barrell B, Turner 

CM, Waters AP, Sinden RE. A comprehensive survey of the Plasmodium life cycle by 

genomic, transcriptomic, and proteomic analyses. Science. 2005 Jan

7;307(5706):82-6. PubMed PMID: 15637271.


33: Parkinson J, Mitreva M, Whitton C, Thomson M, Daub J, Martin J, Schmid R,

Hall N, Barrell B, Waterston RH, McCarter JP, Blaxter ML. A transcriptomic

analysis of the phylum Nematoda. Nat Genet. 2004 Dec;36(12):1259-67. Epub 2004

Nov 14. PubMed PMID: 15543149.


34: Whitton C, Daub J, Quail M, Hall N, Foster J, Ware J, Ganatra M, Slatko B,

Barrell B, Blaxter M. A genome sequence survey of the filarial nematode Brugia

malayi: repeats, gene discovery, and comparative genomics. Mol Biochem Parasitol.

2004 Oct;137(2):215-27. PubMed PMID: 15383292.


35: Holden MT, Titball RW, Peacock SJ, Cerdeño-Tárraga AM, Atkins T, Crossman LC,

Pitt T, Churcher C, Mungall K, Bentley SD, Sebaihia M, Thomson NR, Bason N,

Beacham IR, Brooks K, Brown KA, Brown NF, Challis GL, Cherevach I, Chillingworth 

T, Cronin A, Crossett B, Davis P, DeShazer D, Feltwell T, Fraser A, Hance Z,

Hauser H, Holroyd S, Jagels K, Keith KE, Maddison M, Moule S, Price C, Quail MA, 

Rabbinowitsch E, Rutherford K, Sanders M, Simmonds M, Songsivilai S, Stevens K,

Tumapa S, Vesaratchavest M, Whitehead S, Yeats C, Barrell BG, Oyston PC, Parkhill

J. Genomic plasticity of the causative agent of melioidosis, Burkholderia

pseudomallei. Proc Natl Acad Sci U S A. 2004 Sep 28;101(39):14240-5. Epub 2004

Sep 17. PubMed PMID: 15377794; PubMed Central PMCID: PMC521101.


36: Holden MT, Feil EJ, Lindsay JA, Peacock SJ, Day NP, Enright MC, Foster TJ,

Moore CE, Hurst L, Atkin R, Barron A, Bason N, Bentley SD, Chillingworth C,

Chillingworth T, Churcher C, Clark L, Corton C, Cronin A, Doggett J, Dowd L,

Feltwell T, Hance Z, Harris B, Hauser H, Holroyd S, Jagels K, James KD, Lennard

N, Line A, Mayes R, Moule S, Mungall K, Ormond D, Quail MA, Rabbinowitsch E,

Rutherford K, Sanders M, Sharp S, Simmonds M, Stevens K, Whitehead S, Barrell BG,

Spratt BG, Parkhill J. Complete genomes of two clinical Staphylococcus aureus

strains: evidence for the rapid evolution of virulence and drug resistance. Proc 

Natl Acad Sci U S A. 2004 Jun 29;101(26):9786-91. Epub 2004 Jun 22. PubMed PMID: 

15213324; PubMed Central PMCID: PMC470752.


37: Pain A, Woodward J, Quail MA, Anderson MJ, Clark R, Collins M, Fosker N,

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38: Bentley SD, Brown S, Murphy LD, Harris DE, Quail MA, Parkhill J, Barrell BG, 

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39: Hertz-Fowler C, Peacock CS, Wood V, Aslett M, Kerhornou A, Mooney P, Tivey A,

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2004 Jan 1;32(Database issue):D339-43. PubMed PMID: 14681429; PubMed Central

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40: Cerdeño-Tárraga AM, Efstratiou A, Dover LG, Holden MT, Pallen M, Bentley SD, 

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complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129.

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41: Parkhill J, Sebaihia M, Preston A, Murphy LD, Thomson N, Harris DE, Holden

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Sharp S, Simmonds M, Skelton J, Squares R, Squares S, Stevens K, Unwin L,

Whitehead S, Barrell BG, Maskell DJ. Comparative analysis of the genome sequences

of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica. 

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42: Hall N, Berriman M, Lennard NJ, Harris BR, Hertz-Fowler C, Bart-Delabesse EN,

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Kay MP, Leech V, Mayes R, Price C, Quail MA, Rabbinowitsch E, Reitter C,

Rutherford K, Sasse J, Sharp S, Shownkeen R, MacLeod A, Taylor S, Tweedie A,

Turner CM, Tait A, Gull K, Barrell B, Melville SE. The DNA sequence of chromosome

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and polymorphism. Nucleic Acids Res. 2003 Aug 15;31(16):4864-73. PubMed PMID:

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43: Garnier T, Eiglmeier K, Camus JC, Medina N, Mansoor H, Pryor M, Duthoy S,

Grondin S, Lacroix C, Monsempe C, Simon S, Harris B, Atkin R, Doggett J, Mayes R,

Keating L, Wheeler PR, Parkhill J, Barrell BG, Cole ST, Gordon SV, Hewinson RG.

The complete genome sequence of Mycobacterium bovis. Proc Natl Acad Sci U S A.

2003 Jun 24;100(13):7877-82. Epub 2003 Jun 3. PubMed PMID: 12788972; PubMed

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44: Bentley SD, Maiwald M, Murphy LD, Pallen MJ, Yeats CA, Dover LG, Norbertczak 

HT, Besra GS, Quail MA, Harris DE, von Herbay A, Goble A, Rutter S, Squares R,

Squares S, Barrell BG, Parkhill J, Relman DA. Sequencing and analysis of the

genome of the Whipple's disease bacterium Tropheryma whipplei. Lancet. 2003 Feb

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45: Hall N, Pain A, Berriman M, Churcher C, Harris B, Harris D, Mungall K, Bowman

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S, Smith R, Squares R, Squares S, Stevens K, Taylor K, Tivey A, Unwin L,

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46: Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain

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AH, Fraunholz MJ, Roos DS, Ralph SA, McFadden GI, Cummings LM, Subramanian GM,

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47: Guiliano DB, Hall N, Jones SJ, Clark LN, Corton CH, Barrell BG, Blaxter ML.

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distantly related nematodes. Genome Biol. 2002 Sep 26;3(10):RESEARCH0057. Epub

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48: Bentley SD, Chater KF, Cerdeño-Tárraga AM, Challis GL, Thomson NR, James KD, 

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MA, Rutherford K, Rutter S, Seeger K, Saunders D, Sharp S, Squares R, Squares S, 

Taylor K, Warren T, Wietzorrek A, Woodward J, Barrell BG, Parkhill J, Hopwood DA.

Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).

Nature. 2002 May 9;417(6885):141-7. PubMed PMID: 12000953.


49: Aves SJ, Hunt C, Xiang Z, Lyne MH, Wood V, Rajandream MA, Skelton J, Churcher

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50: Wood V, Gwilliam R, Rajandream MA, Lyne M, Lyne R, Stewart A, Sgouros J, Peat

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Benito J, Domínguez A, Revuelta JL, Moreno S, Armstrong J, Forsburg SL, Cerutti

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BG, Nurse P. The genome sequence of Schizosaccharomyces pombe. Nature. 2002 Feb

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51: Peter A, Schöttler P, Werner M, Beinert N, Dowe G, Burkert P, Mourkioti F,

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52: Scott GM, Barrell BG, Oram J, Rawlinson WD. Characterisation of transcripts

from the human cytomegalovirus genes TRL7, UL20a, UL36, UL65, UL94, US3 and US34.

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53: Eiglmeier K, Parkhill J, Honoré N, Garnier T, Tekaia F, Telenti A, Klatser P,

James KD, Thomson NR, Wheeler PR, Churcher C, Harris D, Mungall K, Barrell BG,

Cole ST. The decaying genome of Mycobacterium leprae. Lepr Rev. 2001

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54: Parkhill J, Dougan G, James KD, Thomson NR, Pickard D, Wain J, Churcher C,

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Larsen TS, Leather S, Moule S, O'Gaora P, Parry C, Quail M, Rutherford K,

Simmonds M, Skelton J, Stevens K, Whitehead S, Barrell BG. Complete genome

sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18.

Nature. 2001 Oct 25;413(6858):848-52. PubMed PMID: 11677608.


55: Parkhill J, Wren BW, Thomson NR, Titball RW, Holden MT, Prentice MB, Sebaihia

M, James KD, Churcher C, Mungall KL, Baker S, Basham D, Bentley SD, Brooks K,

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Oyston PC, Quail M, Rutherford K, Simmonds M, Skelton J, Stevens K, Whitehead S, 

Barrell BG. Genome sequence of Yersinia pestis, the causative agent of plague.

Nature. 2001 Oct 4;413(6855):523-7. PubMed PMID: 11586360.


56: Tosato V, Ciarloni L, Ivens AC, Rajandream MA, Barrell BG, Bruschi CV.

Secondary DNA structure analysis of the coding strand switch regions of five

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57: Dorrell N, Mangan JA, Laing KG, Hinds J, Linton D, Al-Ghusein H, Barrell BG, 

Parkhill J, Stoker NG, Karlyshev AV, Butcher PD, Wren BW. Whole genome comparison

of Campylobacter jejuni human isolates using a low-cost microarray reveals

extensive genetic diversity. Genome Res. 2001 Oct;11(10):1706-15. PubMed PMID:

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58: Sánchez M, Revuelta JL, del Rey F, Gwilliam R, Skelton J, Churcher C,

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59: Benos PV, Gatt MK, Murphy L, Harris D, Barrell B, Ferraz C, Vidal S, Brun C, 

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Borkova D, Miñana B, Kafatos FC, Bolshakov S, Sidén-Kiamos I, Papagiannakis G,

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60: del Portillo HA, Fernandez-Becerra C, Bowman S, Oliver K, Preuss M, Sanchez

CP, Schneider NK, Villalobos JM, Rajandream MA, Harris D, Pereira da Silva LH,

Barrell B, Lanzer M. A superfamily of variant genes encoded in the subtelomeric

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61: Hunt C, Moore K, Xiang Z, Hurst SM, McDougall RC, Rajandream MA, Barrell BG, 

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Schizosaccharomyces pombe chromosome I contains seven permease genes. Yeast. 2001

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62: Cole ST, Eiglmeier K, Parkhill J, James KD, Thomson NR, Wheeler PR, Honoré N,

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Connor R, Davies RM, Devlin K, Duthoy S, Feltwell T, Fraser A, Hamlin N, Holroyd 

S, Hornsby T, Jagels K, Lacroix C, Maclean J, Moule S, Murphy L, Oliver K, Quail 

MA, Rajandream MA, Rutherford KM, Rutter S, Seeger K, Simon S, Simmonds M,

Skelton J, Squares R, Squares S, Stevens K, Taylor K, Whitehead S, Woodward JR,

Barrell BG. Massive gene decay in the leprosy bacillus. Nature. 2001 Feb

22;409(6823):1007-11. PubMed PMID: 11234002.


63: Wood V, Rutherford KM, Ivens A, Rajandream MA, Barrell B. A re-annotation of 

the Saccharomyces cerevisiae genome. Comp Funct Genomics. 2001;2(3):143-54. doi: 

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64: Keely SP, Wakefield AE, Cushion MT, Smulian AG, Hall N, Barrell BG, Stringer 

JR. Detailed structure of Pneumocystis carinii chromosome ends. J Eukaryot

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65: Gordon SV, Eiglmeier K, Garnier T, Brosch R, Parkhill J, Barrell B, Cole ST, 

Hewinson RG. Genomics of Mycobacterium bovis. Tuberculosis (Edinb).

2001;81(1-2):157-63. Review. PubMed PMID: 11463237.


66: Seoighe C, Federspiel N, Jones T, Hansen N, Bivolarovic V, Surzycki R, Tamse 

R, Komp C, Huizar L, Davis RW, Scherer S, Tait E, Shaw DJ, Harris D, Murphy L,

Oliver K, Taylor K, Rajandream MA, Barrell BG, Wolfe KH. Prevalence of small

inversions in yeast gene order evolution. Proc Natl Acad Sci U S A. 2000 Dec

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67: Xiang Z, Moore K, Wood V, Rajandream MA, Barrell BG, Skelton J, Churcher CM, 

Lyne MH, Devlin K, Gwilliam R, Rutherford KM, Aves SJ. Analysis of 114 kb of DNA 

sequence from fission yeast chromosome 2 immediately centromere-distal to his5.

Yeast. 2000 Nov;16(15):1405-11. PubMed PMID: 11054821.


68: Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA, Barrell

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69: Xiang Z, Wood V, Rajandream MA, Barrell BG, Moore K, Hunt C, Aves SJ. Current

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70: Xiang Z, Wood V, Rajandream MA, Barrell BG, Moore K, Hunt C, Aves SJ. The

mating-type region of Schizosaccharomyces pombe h(-S) 972: sequencing and

analysis of 69 kb including the expressed mat1 locus. Yeast. 2000

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71: Parkhill J, Achtman M, James KD, Bentley SD, Churcher C, Klee SR, Morelli G, 

Basham D, Brown D, Chillingworth T, Davies RM, Davis P, Devlin K, Feltwell T,

Hamlin N, Holroyd S, Jagels K, Leather S, Moule S, Mungall K, Quail MA,

Rajandream MA, Rutherford KM, Simmonds M, Skelton J, Whitehead S, Spratt BG,

Barrell BG. Complete DNA sequence of a serogroup A strain of Neisseria

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72: Benos PV, Gatt MK, Ashburner M, Murphy L, Harris D, Barrell B, Ferraz C,

Vidal S, Brun C, Demailles J, Cadieu E, Dreano S, Gloux S, Lelaure V, Mottier S, 

Galibert F, Borkova D, Minana B, Kafatos FC, Louis C, Sidén-Kiamos I, Bolshakov

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73: Parkhill J, Wren BW, Mungall K, Ketley JM, Churcher C, Basham D,

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S, Pallen MJ, Penn CW, Quail MA, Rajandream MA, Rutherford KM, van Vliet AH,

Whitehead S, Barrell BG. The genome sequence of the food-borne pathogen

Campylobacter jejuni reveals hypervariable sequences. Nature. 2000 Feb

10;403(6770):665-8. PubMed PMID: 10688204.


74: Bowman S, Lawson D, Basham D, Brown D, Chillingworth T, Churcher CM, Craig A,

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Holroyd S, Hornsby T, Horrocks P, Jagels K, Jassal B, Kyes S, McLean J, Moule S, 

Mungall K, Murphy L, Oliver K, Quail MA, Rajandream MA, Rutter S, Skelton J,

Squares R, Squares S, Sulston JE, Whitehead S, Woodward JR, Newbold C, Barrell

BG. The complete nucleotide sequence of chromosome 3 of Plasmodium falciparum.

Nature. 1999 Aug 5;400(6744):532-8. PubMed PMID: 10448855.


75: Preston A, Allen AG, Cadisch J, Thomas R, Stevens K, Churcher CM, Badcock KL,

Parkhill J, Barrell B, Maskell DJ. Genetic basis for lipopolysaccharide O-antigen

biosynthesis in bordetellae. Infect Immun. 1999 Aug;67(8):3763-7. PubMed PMID:

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76: Xiang Z, Lyne MH, Wood V, Rajandream MA, Barrell BG, Aves SJ. DNA sequencing 

and analysis of a 67.4 kb region from the right arm of Schizosaccharomyces pombe 

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77: Gordon SV, Heym B, Parkhill J, Barrell B, Cole ST. New insertion sequences

and a novel repeated sequence in the genome of Mycobacterium tuberculosis H37Rv. 

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78: Tekaia F, Gordon SV, Garnier T, Brosch R, Barrell BG, Cole ST. Analysis of

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79: Cole ST, Brosch R, Parkhill J, Garnier T, Churcher C, Harris D, Gordon SV,

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Chillingworth T, Connor R, Davies R, Devlin K, Feltwell T, Gentles S, Hamlin N,

Holroyd S, Hornsby T, Jagels K, Krogh A, McLean J, Moule S, Murphy L, Oliver K,

Osborne J, Quail MA, Rajandream MA, Rogers J, Rutter S, Seeger K, Skelton J,

Squares R, Squares S, Sulston JE, Taylor K, Whitehead S, Barrell BG. Deciphering 

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Nature. 1998 Jun 11;393(6685):537-44. Erratum in: Nature 1998 Nov

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80: Brosch R, Gordon SV, Billault A, Garnier T, Eiglmeier K, Soravito C, Barrell 

BG, Cole ST. Use of a Mycobacterium tuberculosis H37Rv bacterial artificial

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81: Cole ST, Barrell BG. Analysis of the genome of Mycobacterium tuberculosis

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82: Bussey H, Storms RK, Ahmed A, Albermann K, Allen E, Ansorge W, Araujo R,

Aparicio A, Barrell B, Badcock K, Benes V, Botstein D, Bowman S, Brückner M,

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84: Churcher C, Bowman S, Badcock K, Bankier A, Brown D, Chillingworth T, Connor 

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85: Davis-Poynter NJ, Lynch DM, Vally H, Shellam GR, Rawlinson WD, Barrell BG,

Farrell HE. Identification and characterization of a G protein-coupled receptor

homolog encoded by murine cytomegalovirus. J Virol. 1997 Feb;71(2):1521-9. PubMed

PMID: 8995678; PubMed Central PMCID: PMC191209.


86: Rawlinson WD, Farrell HE, Barrell BG. Analysis of the complete DNA sequence

of murine cytomegalovirus. J Virol. 1996 Dec;70(12):8833-49. PubMed PMID:

8971012; PubMed Central PMCID: PMC190980.


87: Goffeau A, Barrell BG, Bussey H, Davis RW, Dujon B, Feldmann H, Galibert F,

Hoheisel JD, Jacq C, Johnston M, Louis EJ, Mewes HW, Murakami Y, Philippsen P,

Tettelin H, Oliver SG. Life with 6000 genes. Science. 1996 Oct 25;274(5287):546, 

563-7. Review. PubMed PMID: 8849441.


88: Walsh S, Barrell B. The Saccharomyces cerevisiae genome on the World Wide

Web. Trends Genet. 1996 Jul;12(7):276-7. PubMed PMID: 8763500.


89: Drees B, Brown C, Barrell BG, Bretscher A. Tropomyosin is essential in yeast,

yet the TPM1 and TPM2 products perform distinct functions. J Cell Biol. 1995

Feb;128(3):383-92. PubMed PMID: 7844152; PubMed Central PMCID: PMC2120352.


90: Lawrence GL, Nicholas J, Barrell BG. Human herpesvirus 6 (strain U1102)

encodes homologues of the conserved herpesvirus glycoprotein gM and the

alphaherpesvirus origin-binding protein. J Gen Virol. 1995 Jan;76 ( Pt 1):147-52.

PubMed PMID: 7844524.


91: Rowley N, Prip-Buus C, Westermann B, Brown C, Schwarz E, Barrell B, Neupert

W. Mdj1p, a novel chaperone of the DnaJ family, is involved in mitochondrial

biogenesis and protein folding. Cell. 1994 Apr 22;77(2):249-59. PubMed PMID:

8168133.


92: Miklos D, Caplan S, Mertens D, Hynes G, Pitluk Z, Kashi Y, Harrison-Lavoie K,

Stevenson S, Brown C, Barrell B, et al. Primary structure and function of a

second essential member of the heterooligomeric TCP1 chaperonin complex of yeast,

TCP1 beta. Proc Natl Acad Sci U S A. 1994 Mar 29;91(7):2743-7. PubMed PMID:

7908441; PubMed Central PMCID: PMC43446.


93: Rawlinson WD, Barrell BG. Spliced transcripts of human cytomegalovirus. J

Virol. 1993 Sep;67(9):5502-13. PubMed PMID: 7688825; PubMed Central PMCID:

PMC237953.


94: Smith V, Craxton M, Bankier AT, Brown CM, Rawlinson WD, Chee MS, Barrell BG. 

Preparation and fluorescent sequencing of M13 clones: microtiter methods. Methods

Enzymol. 1993;218:173-87. PubMed PMID: 8510532.


95: Efstathiou S, Lawrence GL, Brown CM, Barrell BG. Identification of homologues

to the human cytomegalovirus US22 gene family in human herpesvirus 6. J Gen

Virol. 1992 Jul;73 ( Pt 7):1661-71. PubMed PMID: 1321206.


96: Rawlinson WD, Chee MS, Smith V, Barrell BG. Single stranded rescue from

phagemids in microtitre plates. Nucleic Acids Res. 1991 Sep 11;19(17):4779.

PubMed PMID: 1891372; PubMed Central PMCID: PMC328733.


97: Smith V, Barrell BG. Cloning of a yeast U1 snRNP 70K protein homologue:

functional conservation of an RNA-binding domain between humans and yeast. EMBO

J. 1991 Sep;10(9):2627-34. PubMed PMID: 1714384; PubMed Central PMCID: PMC452962.


98: Martignetti JA, Barrell BG. Sequence of the HindIII T fragment of human

cytomegalovirus, which encodes a DNA helicase. J Gen Virol. 1991 May;72 ( Pt

5):1113-21. PubMed PMID: 1851811.


99: Beck S, Barrell B. An HCMV reading frame which has similarity with both the V

and C regions of the TCR gamma chain. DNA Seq. 1991;2(1):33-8. PubMed PMID:

1666312.


100: Barrell B. DNA sequencing: present limitations and prospects for the future.

FASEB J. 1991 Jan;5(1):40-5. Review. PubMed PMID: 1991583.


101: Parker BD, Bankier A, Satchwell S, Barrell B, Farrell PJ. Sequence and

transcription of Raji Epstein-Barr virus DNA spanning the B95-8 deletion region. 

Virology. 1990 Nov;179(1):339-46. PubMed PMID: 2171209.


102: Chee MS, Satchwell SC, Preddie E, Weston KM, Barrell BG. Human

cytomegalovirus encodes three G protein-coupled receptor homologues. Nature. 1990

Apr 19;344(6268):774-7. PubMed PMID: 2158627.


103: Chee M, Barrell B. Herpesviruses: a study of parts. Trends Genet. 1990

Mar;6(3):86-91. Review. PubMed PMID: 2183417.


104: Littler E, Lawrence G, Liu MY, Barrell BG, Arrand JR. Identification,

cloning, and expression of the major capsid protein gene of human herpesvirus 6. 

J Virol. 1990 Feb;64(2):714-22. PubMed PMID: 2153237; PubMed Central PMCID:

PMC249165.


105: Smith V, Brown CM, Bankier AT, Barrell BG. Semiautomated preparation of DNA 

templates for large-scale sequencing projects. DNA Seq. 1990;1(1):73-8. PubMed

PMID: 2132961.


106: Lawrence GL, Chee M, Craxton MA, Gompels UA, Honess RW, Barrell BG. Human

herpesvirus 6 is closely related to human cytomegalovirus. J Virol. 1990

Jan;64(1):287-99. PubMed PMID: 2152817; PubMed Central PMCID: PMC249101.


107: Chee MS, Lawrence GL, Barrell BG. Alpha-, beta- and gammaherpesviruses

encode a putative phosphotransferase. J Gen Virol. 1989 May;70 ( Pt 5):1151-60.

PubMed PMID: 2543772.


108: Honess RW, Gompels UA, Barrell BG, Craxton M, Cameron KR, Staden R, Chang

YN, Hayward GS. Deviations from expected frequencies of CpG dinucleotides in

herpesvirus DNAs may be diagnostic of differences in the states of their latent

genomes. J Gen Virol. 1989 Apr;70 ( Pt 4):837-55. PubMed PMID: 2732708.


109: Chee M, Rudolph SA, Plachter B, Barrell B, Jahn G. Identification of the

major capsid protein gene of human cytomegalovirus. J Virol. 1989

Mar;63(3):1345-53. PubMed PMID: 2536837; PubMed Central PMCID: PMC247832.


110: Meyer H, Bankier AT, Landini MP, Brown CM, Barrell BG, Rüger B, Mach M.

Identification and procaryotic expression of the gene coding for the highly

immunogenic 28-kilodalton structural phosphoprotein (pp28) of human

cytomegalovirus. J Virol. 1988 Jul;62(7):2243-50. PubMed PMID: 2836608; PubMed

Central PMCID: PMC253363.


111: Kouzarides T, Bankier AT, Satchwell SC, Preddy E, Barrell BG. An immediate

early gene of human cytomegalovirus encodes a potential membrane glycoprotein.

Virology. 1988 Jul;165(1):151-64. Erratum in: Virology 1988 Nov;167(1):326-7.

PubMed PMID: 2838954.


112: Hatfull G, Bankier AT, Barrell BG, Farrell PJ. Sequence analysis of Raji

Epstein-Barr virus DNA. Virology. 1988 Jun;164(2):334-40. PubMed PMID: 2835854.


113: Cranage MP, Smith GL, Bell SE, Hart H, Brown C, Bankier AT, Tomlinson P,

Barrell BG, Minson TC. Identification and expression of a human cytomegalovirus

glycoprotein with homology to the Epstein-Barr virus BXLF2 product,

varicella-zoster virus gpIII, and herpes simplex virus type 1 glycoprotein H. J

Virol. 1988 Apr;62(4):1416-22. PubMed PMID: 2831402; PubMed Central PMCID:

PMC253155.


114: Beck S, Barrell BG. Human cytomegalovirus encodes a glycoprotein homologous 

to MHC class-I antigens. Nature. 1988 Jan 21;331(6153):269-72. PubMed PMID:

2827039.


115: Jahn G, Kouzarides T, Mach M, Scholl BC, Plachter B, Traupe B, Preddie E,

Satchwell SC, Fleckenstein B, Barrell BG. Map position and nucleotide sequence of

the gene for the large structural phosphoprotein of human cytomegalovirus. J

Virol. 1987 May;61(5):1358-67. PubMed PMID: 3033266; PubMed Central PMCID:

PMC254110.


116: Kouzarides T, Bankier AT, Satchwell SC, Weston K, Tomlinson P, Barrell BG.

Large-scale rearrangement of homologous regions in the genomes of HCMV and EBV.

Virology. 1987 Apr;157(2):397-413. PubMed PMID: 3029980.


117: Rüger B, Klages S, Walla B, Albrecht J, Fleckenstein B, Tomlinson P, Barrell

B. Primary structure and transcription of the genes coding for the two virion

phosphoproteins pp65 and pp71 of human cytomegalovirus. J Virol. 1987

Feb;61(2):446-53. PubMed PMID: 3027374; PubMed Central PMCID: PMC253968.


118: Kouzarides T, Bankier AT, Satchwell SC, Weston K, Tomlinson P, Barrell BG.

Sequence and transcription analysis of the human cytomegalovirus DNA polymerase

gene. J Virol. 1987 Jan;61(1):125-33. PubMed PMID: 3023690; PubMed Central PMCID:

PMC255219.


119: Bankier AT, Weston KM, Barrell BG. Random cloning and sequencing by the

M13/dideoxynucleotide chain termination method. Methods Enzymol. 1987;155:51-93. 

PubMed PMID: 3323821.


120: Weston K, Barrell BG. Sequence of the short unique region, short repeats,

and part of the long repeats of human cytomegalovirus. J Mol Biol. 1986 Nov

20;192(2):177-208. PubMed PMID: 3031311.


121: Cranage MP, Kouzarides T, Bankier AT, Satchwell S, Weston K, Tomlinson P,

Barrell B, Hart H, Bell SE, Minson AC, et al. Identification of the human

cytomegalovirus glycoprotein B gene and induction of neutralizing antibodies via 

its expression in recombinant vaccinia virus. EMBO J. 1986 Nov;5(11):3057-63.

PubMed PMID: 3024973; PubMed Central PMCID: PMC1167261.


122: Gibson TJ, Barrell BG, Farrell PJ. Coding content and expression of the EBV 

B95-8 genome in the region from base 62,248 to base 82,920. Virology. 1986 Jul

15;152(1):136-48. PubMed PMID: 3012865.


123: Pellett PE, Biggin MD, Barrell B, Roizman B. Epstein-Barr virus genome may

encode a protein showing significant amino acid and predicted secondary structure

homology with glycoprotein B of herpes simplex virus 1. J Virol. 1985

Dec;56(3):807-13. PubMed PMID: 2999435; PubMed Central PMCID: PMC252651.


124: Hudson GS, Gibson TJ, Barrell BG. The BamHI F region of the B95-8

Epstein-Barr virus genome. Virology. 1985 Nov;147(1):99-109. PubMed PMID:

2998075.


125: Hudson GS, Bankier AT, Satchwell SC, Barrell BG. The short unique region of 

the B95-8 Epstein-Barr virus genome. Virology. 1985 Nov;147(1):81-98. PubMed

PMID: 2998073.


126: Bankier AT, Dietrich W, Baer R, Barrell BG, Colbère-Garapin F, Fleckenstein 

B, Bodemer W. Terminal repetitive sequences in herpesvirus saimiri virion DNA. J 

Virol. 1985 Jul;55(1):133-9. PubMed PMID: 2989550; PubMed Central PMCID:

PMC254907.


127: Thrash C, Bankier AT, Barrell BG, Sternglanz R. Cloning, characterization,

and sequence of the yeast DNA topoisomerase I gene. Proc Natl Acad Sci U S A.

1985 Jul;82(13):4374-8. PubMed PMID: 2989818; PubMed Central PMCID: PMC390416.


128: Hudson GS, Farrell PJ, Barrell BG. Two related but differentially expressed 

potential membrane proteins encoded by the EcoRI Dhet region of Epstein-Barr

virus B95-8. J Virol. 1985 Feb;53(2):528-35. PubMed PMID: 2982035; PubMed Central

PMCID: PMC254667.


129: Gibson T, Stockwell P, Ginsburg M, Barrell B. Homology between two EBV early

genes and HSV ribonucleotide reductase and 38K genes. Nucleic Acids Res. 1984 Jun

25;12(12):5087-99. PubMed PMID: 6330697; PubMed Central PMCID: PMC318902.


130: Biggin M, Farrell PJ, Barrell BG. Transcription and DNA sequence of the

BamHI L fragment of B95-8 Epstein-Barr virus. EMBO J. 1984 May;3(5):1083-90.

PubMed PMID: 6203743; PubMed Central PMCID: PMC557477.


131: Wolf H, Motz M, Kühbeck R, Seibl R, Jilg W, Bayliss GJ, Barrell B, Golub E, 

Zeng Y, Gu SY. Strategies for the economic preparation of Epstein-Barr virus

proteins of diagnostic and protective value by genetic engineering: a new

approach based on segments of virus-encoded gene products. IARC Sci Publ.

1984;(63):525-39. PubMed PMID: 6100280.


132: Bankier AT, Deininger PL, Satchwell SC, Baer R, Farrell PJ, Barrell BG. DNA 

sequence analysis of the EcoRI Dhet fragment of B95-8 Epstein-Barr virus

containing the terminal repeat sequences. Mol Biol Med. 1983 Nov;1(4):425-45.

PubMed PMID: 6094955.


133: Séguin C, Farrell PJ, Barrell BG. DNA sequence and transcription of the

BamHI fragment B region of B95-8 Epstein-Barr virus. Mol Biol Med. 1983

Oct;1(3):369-92. PubMed PMID: 6094953.


134: Kouzarides T, Bankier AT, Barrell BG. Nucleotide sequence of the

transforming region of human cytomegalovirus. Mol Biol Med. 1983 Jul;1(1):47-58. 

PubMed PMID: 6092826.


135: Bankier AT, Deininger PL, Farrell PJ, Barrell BG. Sequence analysis of the

17,166 base-pair EcoRI fragment C of B95-8 Epstein-Barr virus. Mol Biol Med. 1983

Jul;1(1):21-45. PubMed PMID: 6092825.


136: Farrell PJ, Deininger PL, Bankier A, Barrell B. Homologous upstream

sequences near Epstein-Barr virus promoters. Proc Natl Acad Sci U S A. 1983

Mar;80(6):1565-9. PubMed PMID: 6300857; PubMed Central PMCID: PMC393642.


137: Farrell PJ, Bankier A, Séguin C, Deininger P, Barrell BG. Latent and lytic

cycle promoters of Epstein-Barr virus. EMBO J. 1983;2(8):1331-8. PubMed PMID:

10872327; PubMed Central PMCID: PMC555279.


138: Deininger PL, Bankier A, Farrell P, Baer R, Barrell B. Sequence analysis and

in vitro transcription of portions of the Epstein-Barr virus genome. J Cell

Biochem. 1982;19(3):267-74. PubMed PMID: 6296170.


139: Anderson S, Bankier AT, Barrell BG, de Bruijn MH, Coulson AR, Drouin J,

Eperon IC, Nierlich DP, Roe BA, Sanger F, Schreier PH, Smith AJ, Staden R, Young 

IG. Sequence and organization of the human mitochondrial genome. Nature. 1981 Apr

9;290(5806):457-65. PubMed PMID: 7219534.


140: de Bruijn MH, Schreier PH, Eperon IC, Barrell BG, Chen EY, Armstrong PW,

Wong JF, Roe BA. A mammalian mitochondrial serine transfer RNA lacking the

"dihydrouridine" loop and stem. Nucleic Acids Res. 1980 Nov 25;8(22):5213-22.

PubMed PMID: 6906662; PubMed Central PMCID: PMC324296.


141: Sanger F, Coulson AR, Barrell BG, Smith AJ, Roe BA. Cloning in

single-stranded bacteriophage as an aid to rapid DNA sequencing. J Mol Biol. 1980

Oct 25;143(2):161-78. PubMed PMID: 6260957.


142: Barrell BG, Anderson S, Bankier AT, de Bruijn MH, Chen E, Coulson AR, Drouin

J, Eperon IC, Nierlich DP, Roe BA, Sanger F, Schreier PH, Smith AJ, Staden R,

Young IG. Different pattern of codon recognition by mammalian mitochondrial

tRNAs. Proc Natl Acad Sci U S A. 1980 Jun;77(6):3164-6. PubMed PMID: 6932013;

PubMed Central PMCID: PMC349574.


143: Barrell BG, Bankier AT, Drouin J. A different genetic code in human

mitochondria. Nature. 1979 Nov 8;282(5735):189-94. PubMed PMID: 226894.


144: Godson GN, Barrell BG, Staden R, Fiddes JC. Nucleotide sequence of

bacteriophage G4 DNA. Nature. 1978 Nov 16;276(5685):236-47. PubMed PMID: 714153.


145: Sanger F, Coulson AR, Friedmann T, Air GM, Barrell BG, Brown NL, Fiddes JC, 

Hutchison CA 3rd, Slocombe PM, Smith M. The nucleotide sequence of bacteriophage 

phiX174. J Mol Biol. 1978 Oct 25;125(2):225-46. PubMed PMID: 731693.


146: Shaw DC, Walker JE, Northrop FD, Barrell BG, Godson GN, Fiddes JC. Gene K, a

new overlapping gene in bacteriophage G4. Nature. 1978 Apr 6;272(5653):510-5.

PubMed PMID: 692656.


147: Fiddes JC, Barrell BG, Godson GN. Nucleotide sequences of the separate

origins of synthesis of bacteriophage G4 viral and complementary DNA strands.

Proc Natl Acad Sci U S A. 1978 Mar;75(3):1081-5. PubMed PMID: 274698; PubMed

Central PMCID: PMC411412.


148: Barrell BG, Shaw DC, Walker JE, Northrop FD, Godson GN, Fiddes JC.

Overlapping genes in bacteriophages phiX174 and G4. Biochem Soc Trans.

1978;6(1):63-7. PubMed PMID: 640205.


149: Sanger F, Air GM, Barrell BG, Brown NL, Coulson AR, Fiddes CA, Hutchison CA,

Slocombe PM, Smith M. Nucleotide sequence of bacteriophage phi X174 DNA. Nature. 

1977 Feb 24;265(5596):687-95. PubMed PMID: 870828.


150: Smith M, Brown NL, Air GM, Barrell BG, Coulson AR, Hutchison CA 3rd, Sanger 

F. DNA sequence at the C termini of the overlapping genes A and B in

bacteriophage phi X174. Nature. 1977 Feb 24;265(5596):702-5. PubMed PMID: 859575.


151: Barrell BG, Air GM, Hutchison CA 3rd. Overlapping genes in bacteriophage

phiX174. Nature. 1976 Nov 4;264(5581):34-41. PubMed PMID: 1004533.


152: McClain WH, Barrell BG, Seidman JG. Nucleotide alterations in bacteriophage 

T4 serine transfer RNA that affect the conversion of precursor RNA into transfer 

RNA. J Mol Biol. 1975 Dec 25;99(4):717-32. PubMed PMID: 1214302.


153: Seidman JG, Barrell BG, McClain WH. Five steps in the conversion of a large 

precursor RNA into bacteriophage proline and serine transfer RNAs. J Mol Biol.

1975 Dec 25;99(4):733-60. PubMed PMID: 175167.


154: Donelson JE, Barrell BG, Weith HL. The use of primed synthesis by DNA

polymerase I to study an intercistronic sequence of phiX-174 DNA. Eur J Biochem. 

1975 Oct 15;58(2):383-95. PubMed PMID: 1102305.


155: Guthrie C, Seidman JG, Comer MM, Bock RM, Schmidt FJ, Barrell BG, McClain

WH. The biology of bacteriophage T4 transfer RNAs. Brookhaven Symp Biol. 1975

Jul;(26):106-23. PubMed PMID: 1104087.


156: Barrell BG, Weith HL, Donelson JE, Robertson HD. Sequence analysis of the

ribosome-protected bacteriophase phiX174 DNA fragment containing the gene G

initiation site. J Mol Biol. 1975 Mar 5;92(3):377-93. PubMed PMID: 1095758.


157: Maniatis T, Ptashne M, Barrell BG, Donelson J. Sequence of a

repressor-binding site in the DNA of bacteriophage lamda. Nature. 1974 Aug

2;250(465):394-7. PubMed PMID: 4854243.


158: Barrell BG, Seidman JG, Guthrie C, McClain WH. Transfer RNA biosynthesis:

the nucleotide sequence of a precursor to serine and proline transfer RNAs. Proc 

Natl Acad Sci U S A. 1974 Feb;71(2):413-6. PubMed PMID: 4521813; PubMed Central

PMCID: PMC388016.


159: McClain WH, Guthrie C, Barrell BG. The psu1+ amber suppressor gene of

bacteriophage T4: identification of its amino acid and transfer RNA. J Mol Biol. 

1973 Dec 5;81(2):157-71. PubMed PMID: 4591185.


160: Barrell BG, Coulson AR, McClain WH. Nucleotide sequence of a glycine

transfer RNA coded by bacteriophage T4. FEBS Lett. 1973 Nov 15;37(1):64-9. PubMed

PMID: 4753761.


161: Guthrie C, Seidman JG, Altman S, Barrell BG, Smith JD, McClain WH.

Identification of tRNA precursor molecules made by phage T4. Nat New Biol. 1973

Nov 7;246(149):6-11. PubMed PMID: 4519024.


162: Robertson HD, Barrell BG, Weith HL, Donelson JE. Isolation and sequence

analysis of a ribosome-protected fragment from bacteriophage phiX 174 DNA. Nat

New Biol. 1973 Jan 10;241(106):38-40. PubMed PMID: 4572838.


163: McClain WH, Guthrie C, Barrell BG. Eight transfer RNAs induced by infection 

of Escherichia coli with bacteriophage T4. Proc Natl Acad Sci U S A. 1972

Dec;69(12):3703-7. PubMed PMID: 4566457; PubMed Central PMCID: PMC389853.


164: Pieczenik G, Barrell BG, Gefter ML. Bacteriophage phi 80-induced low

molecular weight RNA. Arch Biochem Biophys. 1972 Sep;152(1):152-65. PubMed PMID: 

4342104.


165: Jeppesen PG, Barrell BG, Sanger F, Coulson AR. Nucleotide sequences of two

fragments from the coat-protein cistron of bacteriophage R17 ribonucleic acid.

Biochem J. 1972 Aug;128(5):993-1006. PubMed PMID: 4566195; PubMed Central PMCID: 

PMC1173988.


166: Yaniv M, Barrell BG. Sequence relationship of three valine acceptor tRNAs

from Escherichia coli. Nat New Biol. 1971 Sep 22;233(38):113-4. PubMed PMID:

4937864.


167: Yarus M, Barrell BG. The sequence of nucleotides in tRNA Ile from E. coli B.

Biochem Biophys Res Commun. 1971 May 21;43(4):729-34. PubMed PMID: 4935283.


168: Marcaud L, Portier MM, Kourilsky P, Barrell BG, Gros F. A low molecular

weight species of RNA synthesized early after induction of the prophage lambda. J

Mol Biol. 1971 Apr 28;57(2):247-61. PubMed PMID: 5579622.


169: Yaniv M, Favre A, Barrell BG. Structure of transfer RNA. Evidence for

interaction between two non-adjacent nucleotide residues in tRNA from Escherichia

coli. Nature. 1969 Sep 27;223(5213):1331-3. PubMed PMID: 4897373.


170: Adams JM, Jeppesen PG, Sanger F, Barrell BG. Nucleotide sequence from the

coat protein cistron of R17 bacteriophage RNA. Nature. 1969 Sep

6;223(5210):1009-14. PubMed PMID: 5811898.


171: Barrell BG, Sanger F. The sequence of phenylalanine tRNA from E. coli. FEBS 

Lett. 1969 Jun;3(4):275-278. PubMed PMID: 11947028.


172: Yaniv M, Barrell BG. Nucleotide sequence of E. coli B tRNA1-Val. Nature.

1969 Apr 19;222(5190):278-9. PubMed PMID: 4888176.


173: Adams JM, Jeppesen PG, Sanger F, Barrell BG. Nucleotide sequences from

fragments of R17 bacterophage RNA. Cold Spring Harb Symp Quant Biol.

1969;34:611-20. PubMed PMID: 5266180.


174: Brownlee GG, Sanger F, Barrell BG. The sequence of 5 s ribosomal ribonucleic

acid. J Mol Biol. 1968 Jun 28;34(3):379-412. PubMed PMID: 4938553.


175: Brownlee GG, Sanger F, Barrell BG. Nucleotide sequence of 5S-ribosomal RNA

from Escherichia coli. Nature. 1967 Aug 12;215(5102):735-6. PubMed PMID: 4862513.


176: Sanger F, Brownlee GG, Barrell BG. A two-dimensional fractionation procedure

for radioactive nucleotides. J Mol Biol. 1965 Sep;13(2):373-98. PubMed PMID:

5325727

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